DisGeNET - a database of gene-disease associations

List of shared variants

Obesity, C0028754

Disease: Rheumatoid Arthritis

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs1799782	XRCC1	0.474	0.800	19	43553422	missense variant	G/A	snv	9.5E-02	7.0E-02	151
rs1800470	TGFB1	0.515	0.840	19	41353016	missense variant	G/A;C	snv	0.55; 2.4E-04		107
rs25487	XRCC1	0.441	0.800	19	43551574	missense variant	T/C	snv	0.68	0.71	205
rs4420638	APOC1	0.708	0.520	19	44919689	downstream gene variant	A/G	snv		0.18	43
rs5498	ICAM4 ; ICAM1	0.531	0.760	19	10285007	missense variant	A/G	snv	0.44	0.37	99
rs1042522	TP53	0.426	0.800	17	7676154	missense variant	G/C;T	snv	0.67		242
rs1131691014	TP53	0.439	0.800	17	7676154	frameshift variant	-/C	ins			214
rs878854066	TP53	0.439	0.800	17	7676153	missense variant	GG/AC	mnv			213
rs243865	MMP2	0.600	0.640	16	55477894	intron variant	C/T	snv		0.19	48
rs1378942	CSK	0.790	0.240	15	74785026	intron variant	C/A;T	snv			16
rs1256049	ESR2	0.645	0.560	14	64257333	synonymous variant	C/T	snv	6.7E-02	6.3E-02	32
rs367732974	F7	0.790	0.360	13	113105788	5 prime UTR variant	G/A	snv	8.9E-05	2.8E-05	9
rs549591993	F7	0.776	0.400	13	113105794	5 prime UTR variant	C/A	snv	4.0E-04	2.8E-05	12
rs6314	HTR2A	0.677	0.360	13	46834899	missense variant	G/A	snv	7.9E-02	9.5E-02	23
rs5443	CDCA3 ; GNB3	0.532	0.760	12	6845711	synonymous variant	C/T	snv	0.36	0.44	106
rs2229113	IL10RA	0.763	0.360	11	117998955	missense variant	A/G	snv	0.74	0.74	10
rs2237892	KCNQ1	0.790	0.320	11	2818521	intron variant	C/T	snv		9.2E-02	16
rs281864525	HBB	0.851	0.280	11	5227097	5 prime UTR variant	T/A;G	snv		7.0E-06	4
rs34166473	HBD	0.827	0.320	11	5234513	5 prime UTR variant	A/G	snv		7.0E-06	6
rs63750953	HBB	0.790	0.400	11	5227097	5 prime UTR variant	TT/-	delins		7.0E-06	10
rs562962093	MBL2	0.742	0.520	10	52771740	upstream gene variant	T/C	snv		7.0E-06	13
rs72661131	MBL2	0.742	0.480	10	52771739	upstream gene variant	A/G	snv		7.6E-04	15
rs7903146	TCF7L2	0.554	0.680	10	112998590	intron variant	C/G;T	snv			93
rs7044343	LOC107987046 ; IL33	0.752	0.520	9	6254208	intron variant	C/T	snv		0.51	13
rs1799983	NOS3	0.430	0.880	7	150999023	missense variant	T/A;G	snv	0.75		246